「テンプレート:Infobox protein family」の版間の差分

提供：脳科学辞典
ナビゲーションに移動 検索に移動
細 (1版 をインポートしました)
細 (1版)
(2人の利用者による、間の2版が非表示)
1行目: 1行目:
{{infobox
{| class="infobox" style="width: 22em; text-align: left; font-size: 88%; line-height: 1.5em"
| above = {{{Name|{{PAGENAME}} }}}
! colspan=2 style="font-size: 125%; text-align: center" | {{{Name|{{PAGENAME}} }}}
| bodystyle = {{#switch:{{{align|}}}
|-
| left = float:left; clear:left; margin: 0.5em 1em 0.5em 0;
{{#if:{{{image|}}}|
| center = float:none; margin:auto
{{!}} colspan=2 style="text-align:center" {{!}} [[Image:{{{image}}}{{!}}{{#if:{{{width|}}}|{{{width}}}|220}}px]]
| none = float:none; margin: 0.5em 0 0.5em 0;
{{!}}-
| right | #default =
{{#if:{{{caption|}}}|
}}
{{!}} colspan=2 style="text-align:center" {{!}} {{{caption}}}
 
{{!}}-
| image = {{#invoke:InfoboxImage|InfoboxImage|image={{{image|}}}|size={{{image_size|{{{width|}}}}}}|sizedefault=frameless|alt={{{alt|}}}}}
}}
| caption = {{{caption|}}}
|<includeonly>[[Category: Protein pages needing a picture]]</includeonly>}}
 
! colspan=2 scope="col" style="text-align:center; background-color: #ddd" | Identifiers
| headerstyle = background-color: #ddd
|-
| labelstyle  = background-color: #e7dcc3
! style="background-color: #e7dcc3" | Symbol
| datastyle  = background-color: #eee
| style="background-color: #eee" | {{{Symbol|?}}}
 
|-
| header1 = Identifiers
{{#if:{{{Pfam|}}}|
 
! style="background-color: #e7dcc3" {{!}} [[Pfam]]  
| label2 = Symbol
{{!}} style="background-color: #eee" {{!}} [http://pfam.sanger.ac.uk/family?acc={{{Pfam}}} {{{Pfam}}}]
| data2  = {{#if:{{{Symbol|}}} |{{{Symbol}}} | ?{{main other|[[Category:Protein articles without symbol]]}} }}
{{!}}-
 
}}
| label3 = [[Pfam]]
{{#if:{{{Pfam_clan|}}}|
| data3  = {{#if:{{{Pfam|}}}| [http://pfam.xfam.org/family?acc={{{Pfam}}} {{{Pfam}}}]}}
! style="background-color: #e7dcc3" {{!}} [[Pfam]] clan
| label4 = [[Pfam]] clan
{{!}} style="background-color: #eee" {{!}} [http://pfam.sanger.ac.uk/clan/{{{Pfam_clan}}} {{{Pfam_clan}}}]
| data4  = {{#if:{{{Pfam_clan|}}}| [http://pfam.xfam.org/clan/{{{Pfam_clan}}} {{{Pfam_clan}}}]}}
{{!}}-
| label5 = [[InterPro]]
}}
| data5  = {{#if:{{{InterPro|}}}| [https://www.ebi.ac.uk/interpro/entry/{{{InterPro}}} {{{InterPro}}}]}}
{{#if:{{{InterPro|}}}|
| label6 = [[Simple Modular Architecture Research Tool|SMART]]
! style="background-color: #e7dcc3" {{!}} [[InterPro]]
| data6  = {{#if:{{{SMART|}}}|[http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN={{{SMART}}} {{{SMART}}}]}}
{{!}} style="background-color: #eee" {{!}} [http://www.ebi.ac.uk/interpro/Entry/{{{InterPro}}} {{{InterPro}}}]
| label7 = [[PROSITE]]
{{!}}-
| data7  = {{#if:{{{PROSITE|}}}{{{Prosite|}}}| [http://www.expasy.org/cgi-bin/prosite-search-ac?{{#if:{{{PROSITE|}}}|{{{PROSITE}}}|{{{Prosite|}}}}}  {{#if:{{{PROSITE|}}}|{{{PROSITE}}}|{{{Prosite|}}}}}]}}
}}
| label8 =  [[CATH database|CATH]]
{{#if:{{{SMART|}}}|
| data8  = {{#if:{{{CATH|}}}| [http://www.cathdb.info/pdb/{{{CATH}}} {{{CATH}}}]}}
! style="background-color: #e7dcc3" {{!}} [[Simple Modular Architecture Research Tool|SMART]]
| label9 = [[MEROPS]]
{{!}} style="background-color: #eee" {{!}} [http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN={{{SMART}}} {{{SMART}}}]
| data9  = {{#if:{{{MEROPS|}}}| [https://www.ebi.ac.uk/merops/cgi-bin/famsum?family={{{MEROPS}}} {{{MEROPS}}}]}}
{{!}}-
| label10 =  [[Structural Classification of Proteins|SCOP]]
}}
| data10  = {{#if:{{{SCOP|}}}| [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?tlev=fa;&amp;pdb={{{SCOP}}} {{{SCOP}}}]}}
{{#if:{{{PROSITE|}}}|
| label11 =  [[SUPERFAMILY]]
! style="background-color: #e7dcc3" {{!}} [[PROSITE]]
| data11  = {{#if:{{{SCOP|}}}| [http://supfam.org/SUPERFAMILY/cgi-bin/search.cgi?search_field={{{SCOP}}} {{{SCOP}}}]}}
{{!}} style="background-color: #eee" {{!}} [http://www.expasy.org/cgi-bin/prosite-search-ac?{{{PROSITE}}} {{{PROSITE}}}]
| label12 =  [[TCDB]]
{{!}}-
| data12  = {{#if:{{{TCDB|}}}| [http://www.tcdb.org/search/result.php?tc={{{TCDB}}} {{{TCDB}}}]}}
}}
| label13 =  [[Orientations of Proteins in Membranes database|OPM superfamily]]
{{#if:{{{Prosite|}}}|
| data13  = {{#if:{{{OPM family|}}}|[https://opm.phar.umich.edu/superfamilies/{{{OPM family}}} {{{OPM family}}}]}}
! style="background-color: #e7dcc3" {{!}} [[PROSITE]]  
| label14 =  [[Orientations of Proteins in Membranes database|OPM protein]]
{{!}} style="background-color: #eee" {{!}} [http://www.expasy.org/cgi-bin/prosite-search-ac?{{{Prosite}}} {{{Prosite}}}]
| data14  = {{#if:{{{OPM protein|}}}| [https://opm.phar.umich.edu/proteins?search={{{OPM protein}}} {{{OPM protein}}}]}}
{{!}}-
| label15 =  [[CAZy]]
}}
| data15  = {{#if:{{{CAZy|}}}| [http://www.cazy.org/{{{CAZy}}}.html {{{CAZy}}}]}}
{{#if:{{{MEROPS|}}}|
| label16 =  [[Conserved Domain Database|CDD]]
! style="background-color: #e7dcc3" {{!}} [[MEROPS]]
| data16  = {{#if:{{{CDD|}}}| [https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid={{{CDD}}} {{{CDD}}}]}}
{{!}} style="background-color: #eee" {{!}} [http://merops.sanger.ac.uk/cgi-bin/merops.cgi?id={{{MEROPS}}} {{{MEROPS}}}]
| label18 =  [[Membranome database|Membranome]]
{{!}}-
| data18  = {{#if:{{{Membranome superfamily|}}}|[http://membranome.org/protein_superfamilies/{{{Membranome superfamily}}} {{{Membranome superfamily}}}]}}
}}
| label19 =  [[Membranome database|Membranome]]
{{#if:{{{SCOP|}}}|
| data19  = {{#if:{{{Membranome family|}}}|[http://membranome.org/protein_families/{{{Membranome family}}} {{{Membranome family}}}]}}
! style="background-color: #e7dcc3" {{!}} [[Structural Classification of Proteins|SCOP]]  
 
{{!}} style="background-color: #eee" {{!}} [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?tlev=fa;&amp;pdb={{{SCOP}}} {{{SCOP}}}]
 
{{!}}-
| data20 = {{#if:{{{Pfam|}}}|{{infobox
}}
  | bodyclass = collapsible collapsed
{{#if:{{{TCDB|}}}|
  | bodystyle = float:none; clear:none; margin:0; border-width:0; border-collapse:collapse; text-align:left; width:100%
! style="background-color: #e7dcc3" {{!}} [[TCDB]]
  | headerstyle = background-color: #ddd
{{!}} style="background-color: #eee" {{!}} [http://www.tcdb.org/search/result.php?tc={{{TCDB}}} {{{TCDB}}}]
  | labelstyle  = background-color: #e7dcc3; border:#fafafa 2px solid; border-width:3px 2px 0 0;
{{!}}-
  | datastyle  = background-color: #eee; border:#fafafa 2px solid; border-width:3px 0 0 2px;
}}
 
{{#if:{{{OPM family|}}}|
  | header1 = Available protein structures:
! style="background-color: #e7dcc3" {{!}} [[Orientations of Proteins in Membranes database|OPM family]]  
 
{{!}} style="background-color: #eee" {{!}} [http://opm.phar.umich.edu/families.php?superfamily={{{OPM family}}} {{{OPM family}}}]
  | label2 = [[Pfam]]
{{!}}-
  | data2  = [http://pfam.xfam.org/family/{{{Pfam}}}?tab=pdbBlock structures]
}}
  | label3 = [[Protein Data Bank|PDB]]
{{#if:{{{OPM protein|}}}|
  | data3 = [http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=PfamIdQuery&pfamID={{{Pfam}}} RCSB PDB]; [https://www.ebi.ac.uk/pdbe/entry/search/index?pfam_accession:{{{Pfam}}} PDBe]; [https://pdbj.org/searchFor?query={{{Pfam}}} PDBj]
! style="background-color: #e7dcc3" {{!}} [[Orientations of Proteins in Membranes database|OPM protein]]
  | label4 = [[PDBsum]]
{{!}} style="background-color: #eee" {{!}} [http://opm.phar.umich.edu/protein.php?search={{{OPM protein}}} {{{OPM protein}}}]
  | data4 = [https://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/pdbsum/GetPfamStr.pl?pfam_id={{{Pfam}}} structure summary]
{{!}}-
  }}}}
}}
}}{{main other|{{#if:{{{image|}}}|<!--OK-->|[[Category:Protein pages needing a picture]]}}}}<noinclude>
{{#if:{{{CAZy|}}}|
{{documentation}}<!-- place category links on the /doc sub-page, not here -->
! style="background-color: #e7dcc3" {{!}} [[CAZy]]
</noinclude>
{{!}} style="background-color: #eee" {{!}} [http://www.cazy.org/{{{CAZy}}}.html {{{CAZy}}}]
{{!}}-
}}
{{#if:{{{CDD|}}}|
! style="background-color: #e7dcc3" {{!}} [[Conserved domain database|CDD]]  
{{!}} style="background-color: #eee" {{!}} [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid={{{CDD}}} {{{CDD}}}]
{{!}}-
}}
{{#if:{{{Pfam|}}}|
{{!}} colspan=2 cellpadding=0 {{!}}
{{{!}} class="collapsible collapsed" style="text-align: left; border: none; width: 100%"
! colspan=2 style="text-align: center; background-color: #ddd" {{!}} Available protein structures:
{{!}}-
! style="background-color: #e7dcc3" {{!}} [[Pfam]]
{{!}} style="background-color: #eee" {{!}}  [http://pfam.sanger.ac.uk/family/{{{Pfam}}}#tabview=tab9 structures]
{{!}}-
! style="background-color: #e7dcc3" {{!}} [[Protein Data Bank|PDB]]
{{!}} style="background-color: #eee" {{!}} [http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=PfamIdQuery&pfamID={{{Pfam}}} RCSB PDB]; [http://www.ebi.ac.uk/pdbe-srv/view/search?PFAM_domain={{{Pfam}}}&id_type=PFAM_domain&id_value={{{Pfam}}}&search_type=advanced PDBe]
{{!}}-
! style="background-color: #e7dcc3" {{!}} [[PDBsum]]
{{!}} style="background-color: #eee" {{!}} [http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/pdbsum/GetPfamStr.pl?pfam_id={{{Pfam}}} structure summary]
{{!}}}
}}
|}<noinclude>{{documentation}}<!-- place category and language links on the /doc sub-page, not here --></noinclude>

2016年2月4日 (木) 12:19時点における版

Infobox protein family
Identifiers
Symbol ?
[edit] [purge] Documentation icon Template documentation

This is template for a protein family/domain as defined in biological databases such as Pfam.

Usage

To use this template, copy the following text and paste it at the top of your article. Fill in as many fields as possible, but don't worry if some information is missing. 

{{Infobox protein family
| Symbol = 
| Name = 
| image = 
| width = 
| caption = 
| Pfam = 
| Pfam_clan = 
| InterPro = 
| SMART = 
| PROSITE = 
| MEROPS =
| CATH =
| SCOP = 
| TCDB = 
| OPM family = 
| OPM protein = 
| CAZy = 
| CDD =
}}

Examples

The following filled in Pfam infobox template produces the information box to the right.

Ligand-binding domain (LBD)
ファイル:RORC 3L0L.png
Identifiers
Symbol Hormone_recep
Pfam PF00104
InterPro IPR000536
SMART SM00430
CATH 1lbd
SCOP 1lbd
SUPERFAMILY 1lbd
CDD cd06157
{{Infobox protein family
| Symbol = Hormone_recep
| Name = Ligand-binding domain (LBD)
| image = RORC_3L0L.png
| width = 
| caption = [[RAR-related orphan receptor gamma|RORγ]]
| Pfam = PF00104
| InterPro = IPR000536
| SMART = SM00430
| PROSITE = 
| SCOP = 1lbd
| CATH = 1lbd
| TCDB =
| OPM family =
| OPM protein =
| CDD = cd06157
}}

Maintenance

TemplateData

This is the TemplateData documentation for this template used by VisualEditor and other tools.

Infobox protein family

This is template for a protein family/domain as defined in biological databases such as Pfam.

テンプレートパラメーター

パラメーター説明型状態
SymbolSymbol

既定
行省略可能
NameName

既定
行省略可能
Imageimage

既定
ページ名省略可能
Widthwidth

Width for image

既定
文字列省略可能
Captioncaption

Caption for image

既定
文字列省略可能
Pfam family identifierPfam

Auto-links to Pfam family record

既定
行省略可能
Pfam clan identifierPfam_clan

Auto-links to Pfam clan record; a clan is a group of related families.

既定
行省略可能
Interpro identifierInterpro

Auto-links to an Interpro entry

既定
行省略可能
SMART accession numberSMART

Auto-links to a domain entry in the Simple Modular Architecture Research Tool

既定
行省略可能
PROSITE record identifierPROSITE

Auto-links to a PROSITE record search

既定
行省略可能
MEROPS record identifierMEROPS

Auto-links to a MEROPS record (MEROPS is scoped to peptidases and their inhibitors)

既定
行省略可能
SCOP (PDB accession number)SCOP

Given a PDB accession number, auto-links to a SCOP (Structural Classification of Proteins) family level page. Also generates an auto-link to a SCOP SUPERFAMILY record.

既定
行省略可能
CATH (PDB accession number)CATH

Given a PDB accession number, auto-links to CATH (Classification of Protein Structural Domains).

既定
行省略可能
TCDB identifierTCDB

Auto-links to an identifier search in the Transporter Classification Database

既定
行省略可能
OPM superfamily identifierOPM family

Auto-links to a superfamily record in the database of Orientations of Proteins in Membranes.

既定
行省略可能
OPM protein identifierOPM protein

Value will typically be a PDB identifier; auto-links to a protein record in the database of Orientations of Proteins in Membranes

既定
行省略可能
CAZy family identifierCAZy

Auto-links to a family description page in the database of Carbohydrate-Active enZYmes.

既定
行省略可能
CDD uidCDD

Auto-links to a record in the Conserved Domain Database

既定
行省略可能
「https://bsd.neuroinf.jp/w/index.php?title=テンプレート:Infobox_protein_family&oldid=34145」から取得