「テンプレート:Infobox protein family/doc」の版間の差分
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| 20行目: | 20行目: | ||
| PROSITE = | | PROSITE = | ||
| MEROPS = | | MEROPS = | ||
| CATH = | |||
| SCOP = | | SCOP = | ||
| TCDB = | | TCDB = | ||
| 42行目: | 43行目: | ||
| PROSITE = | | PROSITE = | ||
| SCOP = 1lbd | | SCOP = 1lbd | ||
| CATH = 1lbd | |||
| TCDB = | | TCDB = | ||
| OPM family = | | OPM family = | ||
| 60行目: | 62行目: | ||
| PROSITE = | | PROSITE = | ||
| SCOP = 1lbd | | SCOP = 1lbd | ||
| CATH = 1lbd | |||
| TCDB = | | TCDB = | ||
| OPM family = | | OPM family = | ||
| 71行目: | 74行目: | ||
== TemplateData== | == TemplateData== | ||
{{ | {{TemplateData header}} | ||
<templatedata>{ | <templatedata>{ | ||
"description": "This is template for a protein family/domain as defined in biological databases such as Pfam.", | "description": "This is template for a protein family/domain as defined in biological databases such as Pfam.", | ||
| 155行目: | 158行目: | ||
"label": "SCOP (PDB accession number)", | "label": "SCOP (PDB accession number)", | ||
"description": "Given a PDB accession number, auto-links to a SCOP (Structural Classification of Proteins) family level page. Also generates an auto-link to a SCOP SUPERFAMILY record.", | "description": "Given a PDB accession number, auto-links to a SCOP (Structural Classification of Proteins) family level page. Also generates an auto-link to a SCOP SUPERFAMILY record.", | ||
"type": "string/line", | |||
"default": "", | |||
"required": false | |||
}, | |||
"CATH": { | |||
"label": "CATH (PDB accession number)", | |||
"description": "Given a PDB accession number, auto-links to CATH (Classification of Protein Structural Domains).", | |||
"type": "string/line", | "type": "string/line", | ||
"default": "", | "default": "", | ||
2018年8月14日 (火) 02:40時点における版
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 | This is a documentation subpage for テンプレート:Infobox protein family. It contains usage information, categories and other content that is not part of the original テンプレート page. |
This is template for a protein family/domain as defined in biological databases such as Pfam.
Usage
To use this template, copy the following text and paste it at the top of your article. Fill in as many fields as possible, but don't worry if some information is missing.
{{Infobox protein family
| Symbol =
| Name =
| image =
| width =
| caption =
| Pfam =
| Pfam_clan =
| InterPro =
| SMART =
| PROSITE =
| MEROPS =
| CATH =
| SCOP =
| TCDB =
| OPM family =
| OPM protein =
| CAZy =
| CDD =
}}
Examples
The following filled in Pfam infobox template produces the information box to the right.
| Ligand-binding domain (LBD) | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ファイル:RORC 3L0L.png | |||||||||
| Identifiers | |||||||||
| Symbol | Hormone_recep | ||||||||
| Pfam | PF00104 | ||||||||
| InterPro | IPR000536 | ||||||||
| SMART | SM00430 | ||||||||
| CATH | 1lbd | ||||||||
| SCOP | 1lbd | ||||||||
| SUPERFAMILY | 1lbd | ||||||||
| CDD | cd06157 | ||||||||
| |||||||||
{{Infobox protein family
| Symbol = Hormone_recep
| Name = Ligand-binding domain (LBD)
| image = RORC_3L0L.png
| width =
| caption = [[RAR-related orphan receptor gamma|RORγ]]
| Pfam = PF00104
| InterPro = IPR000536
| SMART = SM00430
| PROSITE =
| SCOP = 1lbd
| CATH = 1lbd
| TCDB =
| OPM family =
| OPM protein =
| CDD = cd06157
}}
Maintenance
TemplateData
Infobox protein family
This is template for a protein family/domain as defined in biological databases such as Pfam.
| パラメーター | 説明 | 型 | 状態 | |
|---|---|---|---|---|
| Symbol | Symbol |
| 行 | 省略可能 |
| Name | Name |
| 行 | 省略可能 |
| Image | image |
| ページ名 | 省略可能 |
| Width | width | Width for image
| 文字列 | 省略可能 |
| Caption | caption | Caption for image
| 文字列 | 省略可能 |
| Pfam family identifier | Pfam | Auto-links to Pfam family record
| 行 | 省略可能 |
| Pfam clan identifier | Pfam_clan | Auto-links to Pfam clan record; a clan is a group of related families.
| 行 | 省略可能 |
| Interpro identifier | Interpro | Auto-links to an Interpro entry
| 行 | 省略可能 |
| SMART accession number | SMART | Auto-links to a domain entry in the Simple Modular Architecture Research Tool
| 行 | 省略可能 |
| PROSITE record identifier | PROSITE | Auto-links to a PROSITE record search
| 行 | 省略可能 |
| MEROPS record identifier | MEROPS | Auto-links to a MEROPS record (MEROPS is scoped to peptidases and their inhibitors)
| 行 | 省略可能 |
| SCOP (PDB accession number) | SCOP | Given a PDB accession number, auto-links to a SCOP (Structural Classification of Proteins) family level page. Also generates an auto-link to a SCOP SUPERFAMILY record.
| 行 | 省略可能 |
| CATH (PDB accession number) | CATH | Given a PDB accession number, auto-links to CATH (Classification of Protein Structural Domains).
| 行 | 省略可能 |
| TCDB identifier | TCDB | Auto-links to an identifier search in the Transporter Classification Database
| 行 | 省略可能 |
| OPM superfamily identifier | OPM family | Auto-links to a superfamily record in the database of Orientations of Proteins in Membranes.
| 行 | 省略可能 |
| OPM protein identifier | OPM protein | Value will typically be a PDB identifier; auto-links to a protein record in the database of Orientations of Proteins in Membranes
| 行 | 省略可能 |
| CAZy family identifier | CAZy | Auto-links to a family description page in the database of Carbohydrate-Active enZYmes.
| 行 | 省略可能 |
| CDD uid | CDD | Auto-links to a record in the Conserved Domain Database
| 行 | 省略可能 |