added website to cite web templates
細 (1版) |
(added website to cite web templates) |
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local link_ec_no = string.gsub(ec_no, "," ,"+") --create format for link | local link_ec_no = string.gsub(ec_no, "," ,"+") --create format for link | ||
local EC = "[ | local EC = "[https://www.genome.jp/dbget-bin/www_bget?enzyme+" .. link_ec_no .. " " .. ec_no .. "]" | ||
root | root | ||
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p.renderOrthologs = function(frame, entrez_gene, entrez_gene_mm, ensembl, ensembl_mm, uniprot, uniprot_mm, refseq_mRNA, refseq_mRNA_mm, refseq_prot, refseq_prot_mm, db, chr, gstart, gend, db_mm, chr_mm,gstart_mm, gend_mm) | p.renderOrthologs = function(frame, entrez_gene, entrez_gene_mm, ensembl, ensembl_mm, uniprot, uniprot_mm, refseq_mRNA, refseq_mRNA_mm, refseq_prot, refseq_prot_mm, db, chr, gstart, gend, db_mm, chr_mm,gstart_mm, gend_mm) | ||
local title = "Orthologs" --**lclz** | local title = "[[Ortholog|Orthologs]]" --**lclz** | ||
--to do make the list creation a function | --to do make the list creation a function | ||
--create list for entrez ids | --create list for entrez ids | ||
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local pubmed_link = entrez_gene | local pubmed_link = entrez_gene | ||
if string.match(entrez_gene, '%w+') and entrez_gene ~= "n/a" then | if string.match(entrez_gene, '%w+') and entrez_gene ~= "n/a" then | ||
pubmed_link = frame:extensionTag("ref",frame:expandTemplate{ title = 'cite_web', args = { title ="Human PubMed Reference:" , url = "https://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=Link&LinkName=gene_pubmed&from_uid="..entrez_gene } } )--expandTemplate creates cite web template {{cite web|title=value|url=ref_link..ect}} | pubmed_link = frame:extensionTag("ref",frame:expandTemplate{ title = 'cite_web', args = { title ="Human PubMed Reference:" , url = "https://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=Link&LinkName=gene_pubmed&from_uid="..entrez_gene, website = "National Center for Biotechnology Information, U.S. National Library of Medicine" } } )--expandTemplate creates cite web template {{cite web|title=value|url=ref_link..ect}} | ||
end | end | ||
local pubmed_mm_link = entrez_gene_mm | local pubmed_mm_link = entrez_gene_mm | ||
if string.match(entrez_gene_mm, '%w+') and entrez_gene_mm ~= "n/a" then | if string.match(entrez_gene_mm, '%w+') and entrez_gene_mm ~= "n/a" then | ||
pubmed_mm_link = frame:extensionTag("ref",frame:expandTemplate{ title = 'cite_web', args = { title ="Mouse PubMed Reference:" , url ="https://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=Link&LinkName=gene_pubmed&from_uid="..entrez_gene_mm } } )--expandTemplate creates cite web template {{cite web|title=value|url=ref_link..ect}} | pubmed_mm_link = frame:extensionTag("ref",frame:expandTemplate{ title = 'cite_web', args = { title ="Mouse PubMed Reference:" , url ="https://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=Link&LinkName=gene_pubmed&from_uid="..entrez_gene_mm, website = "National Center for Biotechnology Information, U.S. National Library of Medicine" } } )--expandTemplate creates cite web template {{cite web|title=value|url=ref_link..ect}} | ||
end | end | ||
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claims = entity.claims[pdb_propertyID] | claims = entity.claims[pdb_propertyID] | ||
end | end | ||
local sitelink = " | local sitelink = "https://www.rcsb.org/structure/" | ||
if claims then | if claims then | ||
local results | local results | ||