Property talk:P1057

Documentation

• Start a query
• Current uses
• Statistics by class
• List of values
• List of qualifiers
• Count

chromosome
chromosome on which an entity is localized

Description	the chromosome on which an entity is localized
Represents	chromosome (Q37748)
Data type	Item
Domain	According to this template: any item that can be localized to a set of genomic coordinates, e.g. a gene (Q7187), sequence variant (Q15304597), etc According to statements in the property: gene (Q7187), sequence variant (Q15304597), noncoding DNA (Q1458444) or chromosome abnormality (Q744962) When possible, data should only be stored as statements
Allowed values	any type of chromosome (Q37748) (see latest list), e.g. human chromosome 1 (Q430258), mouse chromosome 1 (Q14864323) (note: this should be moved to the property statements)
Example	RELN (Q414043) → human chromosome 7 (Q657319) rs267601217 (Q15304616) → human chromosome 7 (Q657319) Reln (Q14331135) → mouse chromosome 5 (Q15304656)
Robot and gadget jobs	To be populated by the Gene Wiki bot
Tracking: usage	Category:Pages using Wikidata property P1057 (Q29168735)
Lists	Items with no other statements Most recently created items Items with novalue claims Items with unknown value claims Usage history (total) Usage history (main statement) Database reports/Constraint violations/P1057 Map Random list
Proposal discussion	Proposal discussion
Current uses	Total 3,411,372 Main statement 635,053 18.6% of uses Qualifier 2,776,317 81.4% of uses Reference 2 <0.1% of uses
Search for values

[create Create a translatable help page (preferably in English) for this property to be included here]

Value type “chromosome (Q37748)”: This property should use items as value that contain property “instance of (P31)”. On these, the value for instance of (P31) should be an item that uses subclass of (P279) with value chromosome (Q37748) (or a subclass thereof). (Help)

Exceptions are possible as rare values may exist. Exceptions can be specified using exception to constraint (P2303).
List of violations of this constraint: Database reports/Constraint violations/P1057#Value type Q37748, SPARQL

Type “gene (Q7187), sequence variant (Q15304597), noncoding DNA (Q1458444), chromosome abnormality (Q744962)”: item must contain property “instance of (P31), subclass of (P279)” with classes “gene (Q7187), sequence variant (Q15304597), noncoding DNA (Q1458444), chromosome abnormality (Q744962)” or their subclasses (defined using subclass of (P279)). (Help)

Exceptions are possible as rare values may exist. Exceptions can be specified using exception to constraint (P2303).
List of violations of this constraint: Database reports/Constraint violations/P1057#Type Q7187, Q15304597, Q1458444, Q744962, SPARQL

This property is being used by: hy:Կաղապար:Տեղեկաքարտ Ֆերմենտ eu:Txantiloi:Gaixotasun infotaula, eu:Txantiloi:Gene infotaula automatikoa din:Macuëc:Disease ts:Template:Infobox medical condition ca:Plantilla:Gene2, ca:Plantilla:Infotaula gen 2 tt:Калып:ХромосомаВМ Please notify projects that use this property before big changes (renaming, deletion, merge with another property, etc.)

Replaces P643

Use this property instead of P643 (P643). LaddΩ chat ;) 02:16, 11 February 2014 (UTC)

remove allowed type non-coding RNA

I'm very sorry but RNA in general has no direct assocation with a chromosome. It may have an association with a gene or pseudogene. Mixing pseudogenes with RNA in one object is simply laziness and will hurt people or AIs in later searches. --SCIdude (talk) 07:29, 20 August 2019 (UTC) Ok, there may be a need for those cases where the DNA is intergenic, so I'll add the class noncoding DNA. So every genic noncoding RNA/intergenic RNA needs an pseudogene/noncoding DNA association for specifying the chromosome. --SCIdude (talk) 07:42, 20 August 2019 (UTC)

@SCIdude: I agree with you on principle, but this currently creates constraint violations in all microRNA articles such as hsa-mir-6085 (Q27591293), so we should probably remove the P1057 property from these and ensure they all have encoded by (P702) ? --Hannes Röst (talk) 18:01, 8 October 2020 (UTC)

Exactly, there are 4,558 such items (microRNA and mature microRNA). Note there are multiple issues like strand orientation, genomic start/end (should be both on gene), and the genes having P31+P279-->non-coding RNA. Of course, this is on my list but not at the top. --SCIdude (talk) 06:49, 9 October 2020 (UTC)