Property talk:P638

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PDB structure ID
identifier for 3D structural data as per the PDB (Protein Data Bank) database

Description	Protein Data Bank (PDB) contains 3D structures of proteins and nucleic acids. This property will provide access to such structures and associated images for the corresponding biological molecule.
Applicable "stated in" value	Protein Data Bank (Q766195)
Data type	External identifier
Template parameter	en:Template:GNF_Protein_box en:Template:GNF_Protein_box = PDB ID
Domain	term (note: this should be moved to the property statements)
Allowed values	[0-9][0-9A-Za-z]{3}
Example	According to this template: Reelin = "2ddu" & "2e26" According to statements in the property: hydroxysteroid 11-beta dehydrogenase 1 (Q171604) → 4P38 (RDF) 1XU7 (RDF) plutonium (Q1102) → 4ZHD (RDF) When possible, data should only be stored as statements
Source	https://www.rcsb.org/ http://www.ebi.ac.uk/pdbsum/ https://www.ebi.ac.uk/pdbe/
Formatter URL	https://www.rcsb.org/structure/$1 https://doi.org/10.2210/pdb$1/pdb
Robot and gadget jobs	Collect data from MyGene.info and fill gene wiki items with this data
See also	PDB ligand ID (P3636)
Lists	Items with the most statements of this property Count of items by number of statements (chart) Items with the most statements Items with the fewest statements Count of items by number of sitelinks (chart) Items with the most sitelinks Items with the most sitelinks, but no link to one Wikipedia (sample: Welsh Wikipedia, cywiki) Items with the fewest sitelinks Most linked wikis Items with the most identifier properties Items with no other external identifier Items with no other statements Most recently created items Items with novalue claims Items with unknown value claims Usage history (total) Usage history (main statement) Chart by item creation date Database reports/Constraint violations/P638 Map Random list
Proposal discussion	Proposal discussion
Current uses	Total 147,449 Main statement 103,264 out of 159,140 (65% complete) 70% of uses Qualifier 3 <0.1% of uses Reference 44,182 30% of uses
Search for values

[create Create a translatable help page (preferably in English) for this property to be included here]

Format “[0-9][0-9A-Za-z]{3}”: value must be formatted using this pattern (PCRE syntax). (Help)

List of violations of this constraint: Database reports/Constraint violations/P638#Format, hourly updated report, SPARQL

Scope is as main value (Q54828448), as reference (Q54828450): the property must be used by specified way only (Help)

List of violations of this constraint: Database reports/Constraint violations/P638#Scope, hourly updated report, SPARQL

Item “instance of (P31)”: Items with this property should also have “instance of (P31)”. (Help)

Exceptions are possible as rare values may exist. Exceptions can be specified using exception to constraint (P2303).
List of violations of this constraint: Database reports/Constraint violations/P638#Item P31, search, SPARQL

Allowed entity types are Wikibase item (Q29934200): the property may only be used on a certain entity type (Help)

Exceptions are possible as rare values may exist. Exceptions can be specified using exception to constraint (P2303).
List of violations of this constraint: Database reports/Constraint violations/P638#Entity types

This property is being used by: cy:Nodyn:Cyffuriau ca:Plantilla:Proteïna, ca:Plantilla:Infotaula proteïna Please notify projects that use this property before big changes (renaming, deletion, merge with another property, etc.)

PDB has begun issuing five-character alphanumeric accession codes

See https://www.wwpdb.org/news/news?year=2023#656f4404d78e004e766a96c6

Format should probably be updated. AdrianoRutz (talk) 11:20, 13 December 2023 (UTC)